A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788678



Internal ID19860722
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr18:55621434..55621941hg38UCSC Ensembl
chr18:53288665..53289172hg19UCSC Ensembl
Cytoband18q21.2
Allele length
AssemblyAllele length
hg38508
hg19508
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4570926
Supporting Variants
Samples
Known GenesTCF4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15788678
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000092


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