A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788536



Internal ID19513891
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:48881741..49449734hg38UCSC Ensembl
chr17:46959103..47527096hg19UCSC Ensembl
Cytoband17q21.32
Allele length
AssemblyAllele length
hg38567994
hg19567994
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4338396
Supporting Variants
Samples
Known GenesABI3, ATP5G1, B4GALNT2, FLJ40194, GIP, GNGT2, IGF2BP1, MIR6129, PHB, PHOSPHO1, SNF8, UBE2Z, ZNF652
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15788536
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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