A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15788357



Internal ID19860395
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:13059685..13062888hg38UCSC Ensembl
chr16:13153542..13156745hg19UCSC Ensembl
Cytoband16p13.12
Allele length
AssemblyAllele length
hg383204
hg193204
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4560673
Supporting Variants
Samples
Known GenesSHISA9
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nssv15788357
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.00023


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