A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15787915



Internal ID19513260
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:24591765..24957279hg38UCSC Ensembl
chr13:25165903..25531417hg19UCSC Ensembl
Cytoband13q12.12
Allele length
AssemblyAllele length
hg38365515
hg19365515
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4339262
Supporting Variants
Samples
Known GenesATP12A, CENPJ, RNF17, TPTE2P1, TPTE2P6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15787915
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000092


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