A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15787875



Internal ID19513219
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:120561062..121398246hg38UCSC Ensembl
chr12:120998865..121836049hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg38837185
hg19837185
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4563671
Supporting Variants
Samples
Known GenesACADS, ANAPC5, C12orf43, CABP1, CAMKK2, HNF1A, HNF1A-AS1, MIR4700, MLEC, OASL, P2RX4, P2RX7, POP5, RNF10, SPPL3, UNC119B
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15787875
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000277


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