A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv15787340



Internal ID19512676
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:43410446..90242199hg38UCSC Ensembl
chr10:43905894..92001956hg19UCSC Ensembl
Cytoband10q11.21
Allele length
AssemblyAllele length
hg3846831754
hg1948096063
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4343722
Supporting Variants
Samples
Known GenesA1CF, ACTA2, ADAMTS14, ADIRF, ADK, ADO, AGAP11, AGAP4, AGAP5, AGAP6, AGAP7, AGAP8, AGAP9, AIFM2, ALOX5, ANAPC16, ANK3, ANKRD22, ANKRD30BP3, ANTXRL, ANTXRLP1, ANXA11, ANXA2P3, ANXA7, ANXA8, ANXA8L1, ANXA8L2, AP3M1, ARHGAP22, ARID5B, ASAH2, ASAH2B, ASCC1, ATAD1, ATOH7, BEND3P3, BICC1, BMPR1A, BMS1P1, BMS1P2, BMS1P4, BMS1P5, BMS1P6, C10orf10, C10orf105, C10orf107, C10orf11, C10orf128, C10orf25, C10orf35, C10orf40, C10orf53, C10orf54, C10orf55, C10orf71, C10orf71-AS1, C10orf99, CAMK2G, CCAR1, CCDC6, CCSER2, CDH23, CDHR1, CDK1, CFL1P1, CH25H, CHAT, CHCHD1, CHST3, CISD1, COL13A1, COMTD1, CSTF2T, CTGLF12P, CTNNA3, CTSLP2, CXCL12, DDIT4, DDX21, DDX50, DKK1, DLG5, DLG5-AS1, DNA2, DNAJB12, DNAJC12, DNAJC9, DNAJC9-AS1, DRGX, DUPD1, DUSP13, DYDC1, DYDC2, ECD, EGR2, EIF4EBP2, EIF5AL1, ERCC6, ERCC6-PGBD3, FAM133CP, FAM13C, FAM149B1, FAM170B, FAM170B-AS1, FAM213A, FAM21A, FAM21B, FAM21C, FAM25A, FAM25B, FAM25C, FAM25G, FAM35A, FAM35BP, FAM35DP, FAS, FAS-AS1, FLJ31813, FLJ37201, FRMPD2, FRMPD2P1, FUT11, GDF10, GDF2, GHITM, GLUD1, GLUD1P3, GLUD1P7, GPRIN2, GRID1, GRID1-AS1, H2AFY2, HERC4, HK1, HKDC1, HNRNPA1P33, HNRNPA3P1, HNRNPH3, IFIT1, IFIT1B, IFIT2, IFIT3, IFIT5, IPMK, JMJD1C, JMJD1C-AS1, KAT6B, KCNMA1, KIAA1279, KIF20B, KLLN, LDB3, LINC00595, LINC00619, LINC00840, LINC00841, LINC00842, LINC00844, LINC00845, LINC00856, LINC00857, LINC00858, LINC00864, LINC00865, LINC00948, LIPA, LIPF, LIPJ, LIPK, LIPM, LIPN, LOC100130539, LOC100288974, LOC100996758, LOC283045, LOC439994, LOC642361, LOC728407, LRIT1, LRIT2, LRRC18, LRRC20, LRRTM3, MAPK8, MARCH8, MAT1A, MBL1P, MBL2, MCU, MICU1, MINPP1, MIR107, MIR1256, MIR1296, MIR3156-1, MIR346, MIR3924, MIR4294, MIR4676, MIR4678, MIR4679-1, MIR4679-2, MIR548AV, MIR605, MIR7152, MMRN2, MRPS16, MSMB, MSS51, MTRNR2L5, MYOZ1, MYPN, NCOA4, NDST2, NEUROG3, NODAL, NPFFR1, NPY4R, NRBF2, NRG3, NUDT13, NUTM2A, NUTM2A-AS1, NUTM2B, NUTM2D, OGDHL, OIT3, OPN4, OR13A1, P4HA1, PALD1, PANK1, PAPSS2, PARG, PBLD, PCBD1, PCDH15, PGBD3, PHYHIPL, PLA2G12B, PLAC9, PLAU, POLR3A, PPA1, PPIF, PPP3CB, PRF1, PRKG1, PRKG1-AS1, PSAP, PTEN, PTPN20A, PTPN20B, RASSF4, RBP3, REEP3, RGR, RHOBTB1, RNLS, RPS24, RSU1P2, RTKN2, RUFY2, SAMD8, SAR1A, SEC24C, SFTPA1, SFTPA2, SFTPD, SGMS1, SGPL1, SH2D4B, SIRT1, SLC16A12, SLC16A9, SLC18A3, SLC25A16, SLC29A3, SNCG, SNORD98, SPOCK2, SRGN, STAMBPL1, STOX1, SUPV3L1, SYNPO2L, SYT15, TACR2, TBATA, TET1, TFAM, TIMM23, TMEM254, TMEM254-AS1, TMEM26, TMEM72, TMEM72-AS1, TSPAN14, TSPAN15, TTC18, TYSND1, UBE2D1, UNC5B, UNC5B-AS1, USP54, VCL, VDAC2, VPS26A, VSTM4, WAPAL, WDFY4, ZCCHC24, ZFAND4, ZMIZ1, ZMIZ1-AS1, ZNF22, ZNF239, ZNF32, ZNF32-AS1, ZNF32-AS2, ZNF32-AS3, ZNF365, ZNF485, ZNF487, ZNF488, ZNF503, ZNF503-AS1, ZNF503-AS2, ZSWIM8, ZSWIM8-AS1, ZWINT
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Commentscomplex variant
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv15787340
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


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