A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14810089



Internal ID19627904
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:151708428..151710026hg38UCSC Ensembl
chrX:150876900..150878498hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg381599
hg191599
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3399479
Supporting Variants
SamplesHG02818
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14810089
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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