A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14794199



Internal ID19609039
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:46497437..46497437hg38UCSC Ensembl
chrX:46356872..46356872hg19UCSC Ensembl
CytobandXp11.3
Allele length
AssemblyAllele length
hg38192
hg19192
Variant TypeCNV mobile element insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3413512
Supporting Variants
SamplesHG02818
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14794199
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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