A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14791234



Internal ID19472026
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:90233241..90233241hg38UCSC Ensembl
chr8:91245469..91245469hg19UCSC Ensembl
Cytoband8q21.3
Allele length
AssemblyAllele length
hg38452
hg19452
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3416222
Supporting Variants
SamplesHG00268
Known GenesLINC00534
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14791234
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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