A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14721589



Internal ID19533550
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:54849740..54849740hg38UCSC Ensembl
chr6:54714538..54714538hg19UCSC Ensembl
Cytoband6p12.1
Allele length
AssemblyAllele length
hg38326
hg19326
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3379273
Supporting Variants
SamplesHG01352
Known GenesFAM83B
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14721589
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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