A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14645961



Internal ID19072364
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:197051263..197051312hg38UCSC Ensembl
chr3:196778134..196778183hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg3850
hg1950
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3391470
Supporting Variants
SamplesCHM1
Known GenesDLG1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14645961
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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