A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14590780



Internal ID19520440
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:36292001..36313900hg38UCSC Ensembl
chr17:36358579..36380485hg19UCSC Ensembl
Cytoband17q12
Allele length
AssemblyAllele length
hg3821900
hg1921907
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3355015
Supporting Variants
SamplesHG00733
Known GenesLOC440434
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14590780
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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