A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14577832



Internal ID19491700
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:5055892..5055892hg38UCSC Ensembl
chr17:4959187..4959187hg19UCSC Ensembl
Cytoband17p13.2
Allele length
AssemblyAllele length
hg382410
hg192410
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3348086
Supporting Variants
SamplesHG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14577832
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer