A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14559969



Internal ID19680015
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:28692263..28692939hg38UCSC Ensembl
chr17:27019281..27019957hg19UCSC Ensembl
Cytoband17q11.2
Allele length
AssemblyAllele length
hg38677
hg19677
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3342893
Supporting Variants
SamplesNA12878
Known GenesSUPT6H
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14559969
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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