A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1453837



Internal ID16104441
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:81838937..82011412hg38UCSC Ensembl
Outerchr17:79796813..79969288hg19UCSC Ensembl
Outerchr17:77390101..77562577hg18UCSC Ensembl
Outerchr17:77390101..77562577hg17UCSC Ensembl
Cytoband17q25.3
Allele length
AssemblyAllele length
hg38172476
hg19172476
hg18172477
hg17172477
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv833569
Supporting Variants
Samples
Known GenesALYREF, ANAPC11, ARHGDIA, ASPSCR1, MAFG, MAFG-AS1, MYADML2, NOTUM, NPB, P4HB, PCYT2, PYCR1, SIRT7
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1453837
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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