A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14535948



Internal ID19364967
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:32597348..32598928hg38UCSC Ensembl
chr13:33171485..33173065hg19UCSC Ensembl
Cytoband13q13.1
Allele length
AssemblyAllele length
hg381581
hg191581
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3356885
Supporting Variants
SamplesNA19240
Known GenesPDS5B
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14535948
Frequency
Sample Size14
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer