A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1453561



Internal ID16104165
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:50316997..50473985hg38UCSC Ensembl
Outerchr17:48394358..48551346hg19UCSC Ensembl
Outerchr17:45749357..45906345hg18UCSC Ensembl
Outerchr17:45749357..45906345hg17UCSC Ensembl
Cytoband17q21.33
Allele length
AssemblyAllele length
hg38156989
hg19156989
hg18156989
hg17156989
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv833476
Supporting Variants
Samples
Known GenesACSF2, CHAD, EME1, LRRC59, MRPL27, XYLT2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1453561
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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