A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1453387



Internal ID16103991
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr17:39033205..39210437hg38UCSC Ensembl
Outerchr17:37189458..37366690hg19UCSC Ensembl
Outerchr17:34442984..34620216hg18UCSC Ensembl
Outerchr17:34442984..34620216hg17UCSC Ensembl
Cytoband17q12
Allele length
AssemblyAllele length
hg38177233
hg19177233
hg18177233
hg17177233
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv833440
Supporting Variants
Samples
Known GenesARL5C, CACNB1, LOC100131347, LRRC37A11P, PLXDC1, RPL19
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1453387
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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