A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14531933



Internal ID19743410
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:89285201..89309400hg38UCSC Ensembl
chr11:89018369..89042568hg19UCSC Ensembl
Cytoband11q14.3
Allele length
AssemblyAllele length
hg3824200
hg1924200
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3334186
Supporting Variants
SamplesNA19434
Known GenesTYR
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14531933
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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