A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1452111



Internal ID16102715
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:100474881..100650621hg38UCSC Ensembl
Outerchr15:101015086..101190826hg19UCSC Ensembl
Outerchr15:98832609..99008349hg18UCSC Ensembl
Outerchr15:98832609..99008349hg17UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg38175741
hg19175741
hg18175741
hg17175741
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv833107
Supporting Variants
Samples
Known GenesASB7, CERS3, LINS, PRKXP1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1452111
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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