A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1451865



Internal ID16102469
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr15:32728976..32842787hg38UCSC Ensembl
Outerchr15:33021177..33134988hg19UCSC Ensembl
Outerchr15:30808469..30922280hg18UCSC Ensembl
Outerchr15:30808469..30922280hg17UCSC Ensembl
Cytoband15q13.3
Allele length
AssemblyAllele length
hg38113812
hg19113812
hg18113812
hg17113812
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv832961
Supporting Variants
Samples
Known GenesFMN1, GREM1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1451865
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer