A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1448994



Internal ID16099598
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:2868540..2963987hg38UCSC Ensembl
Outerchr11:2889770..2985217hg19UCSC Ensembl
Outerchr11:2846346..2941793hg18UCSC Ensembl
Outerchr11:2846346..2941793hg17UCSC Ensembl
Cytoband11p15.4
Allele length
AssemblyAllele length
hg3895448
hg1995448
hg1895448
hg1795448
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv832050
Supporting Variants
Samples
Known GenesCDKN1C, KCNQ1DN, NAP1L4, PHLDA2, SLC22A18, SLC22A18AS, SNORA54
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1448994
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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