A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14489659



Internal ID19368928
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:27878461..27878461hg38UCSC Ensembl
chr1:28204972..28204972hg19UCSC Ensembl
Cytoband1p35.3
Allele length
AssemblyAllele length
hg381383
hg191383
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3323838
Supporting Variants
SamplesNA19240
Known GenesTHEMIS2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nssv14489659
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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