A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1448729



Internal ID16099333
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr10:110892331..111043345hg38UCSC Ensembl
Outerchr10:112652089..112803103hg19UCSC Ensembl
Outerchr10:112642079..112793093hg18UCSC Ensembl
Outerchr10:112642079..112793093hg17UCSC Ensembl
Cytoband10q25.2
Allele length
AssemblyAllele length
hg38151015
hg19151015
hg18151015
hg17151015
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv831985
Supporting Variants
Samples
Known GenesBBIP1, MIR4680, PDCD4, RPL13AP6, SHOC2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1448729
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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