A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1448040



Internal ID16098644
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:130598942..130791581hg38UCSC Ensembl
Outerchr9:133474329..133666968hg19UCSC Ensembl
Outerchr9:132464150..132656789hg18UCSC Ensembl
Outerchr9:130503883..130696522hg17UCSC Ensembl
Cytoband9q34.11
Allele length
AssemblyAllele length
hg38192640
hg19192640
hg18192640
hg17192640
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv831735
Supporting Variants
Samples
Known GenesABL1, EXOSC2, FUBP3, MIR6856, PRDM12
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1448040
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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