A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1446529



Internal ID16097133
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:51902939..52076027hg38UCSC Ensembl
Outerchr1:52368611..52541699hg19UCSC Ensembl
Outerchr1:52141199..52314287hg18UCSC Ensembl
Outerchr1:52080632..52253720hg17UCSC Ensembl
Cytoband1p32.3
Allele length
AssemblyAllele length
hg38173089
hg19173089
hg18173089
hg17173089
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv829848
Supporting Variants
Samples
Known GenesBTF3L4, KTI12, RAB3B, TXNDC12
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1446529
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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