A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1443264



Internal ID16093868
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:175252630..175424883hg38UCSC Ensembl
Outerchr3:174970419..175142671hg19UCSC Ensembl
Outerchr3:176453113..176625365hg18UCSC Ensembl
Outerchr3:176453121..176625373hg17UCSC Ensembl
Cytoband3q26.31
Allele length
AssemblyAllele length
hg38172254
hg19172253
hg18172253
hg17172253
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv829800
Supporting Variants
Samples
Known GenesMIR4789, MIR548AY, NAALADL2
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1443264
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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