A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1442832



Internal ID16093436
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr3:52715967..52894203hg38UCSC Ensembl
Outerchr3:52749983..52928219hg19UCSC Ensembl
Outerchr3:52725023..52903259hg18UCSC Ensembl
Outerchr3:52725023..52903259hg17UCSC Ensembl
Cytoband3p21.1
Allele length
AssemblyAllele length
hg38178237
hg19178237
hg18178237
hg17178237
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv834698
Supporting Variants
Samples
Known GenesITIH1, ITIH3, ITIH4, MIR8064, MUSTN1, NEK4, TMEM110, TMEM110-MUSTN1
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1442832
Frequency
Sample Size95
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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