A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1442648



Internal ID16093252
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:241498269..241613859hg38UCSC Ensembl
Outerchr2:242437684..242553274hg19UCSC Ensembl
Outerchr2:242086357..242201947hg18UCSC Ensembl
Outerchr2:242157674..242273264hg17UCSC Ensembl
Cytoband2q37.3
Allele length
AssemblyAllele length
hg38115591
hg19115591
hg18115591
hg17115591
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv834588
Supporting Variants
Samples
Known GenesBOK, BOK-AS1, STK25, THAP4
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)nssv1442648
Frequency
Sample Size95
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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