A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv14421685



Internal ID22159844
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:41635534..41635616hg38UCSC Ensembl
chr1:42101205..42101287hg19UCSC Ensembl
Cytoband1p34.2
Allele length
AssemblyAllele length
hg3883
hg1983
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv3281786
Supporting Variants
SamplesHG00514
Known GenesHIVEP3
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsSequences at least 70% masked by tandem repeat finder or contained within a tandem repeat
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nssv14421685
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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