A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1419477



Internal ID15583261
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:81295258..81298019hg38UCSC Ensembl
Innerchr5:80591077..80593838hg19UCSC Ensembl
Innerchr5:80626833..80629594hg18UCSC Ensembl
Cytoband5q14.1
Allele length
AssemblyAllele length
hg382762
hg192762
hg182762
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv819322
Supporting Variants
SamplesAK1
Known GenesCKMT2-AS1, RNU5D-1, RNU5E-1
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nssv1419477
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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