A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1418684



Internal ID15235738
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:118958319..118978797hg38UCSC Ensembl
Innerchr11:118829029..118849507hg19UCSC Ensembl
Innerchr11:118334239..118354717hg18UCSC Ensembl
Cytoband11q23.3
Allele length
AssemblyAllele length
hg3820479
hg1920479
hg1820479
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv819166
Supporting Variants
SamplesAK1
Known GenesFOXR1, UPK2
MethodOligo aCGH
AnalysisThe array was scanned with Agilent DNA microarray scanner at 2 micron resolution. The resulting image was extracted by Agilent's Feature Extraction software. The log2 ratios were analyzed using NEXUS software. Each aberration call was manually checked to confirm the accuracy of the calls.
PlatformGSE19651
Comments
ReferenceKim_et_al_2009
Pubmed ID19587683
Accession Number(s)nssv1418684
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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