A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1417876



Internal ID16405085
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:9218366..9234863hg38UCSC Ensembl
Innerchr7:9257996..9274493hg19UCSC Ensembl
Innerchr7:9224521..9241018hg18UCSC Ensembl
Innerchr7:9031236..9047733hg17UCSC Ensembl
Cytoband7p21.3
Allele length
AssemblyAllele length
hg3816498
hg1916498
hg1816498
hg1716498
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv818480
Supporting Variants
SamplesNA18852
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nssv1417876
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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