A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1416691



Internal ID16405732
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:40827379..40857860hg38UCSC Ensembl
Innerchr19:41333284..41363765hg19UCSC Ensembl
Innerchr19:46025124..46055605hg18UCSC Ensembl
Innerchr19:46025124..46055605hg17UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg3830482
hg1930482
hg1830482
hg1730482
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv817836
Supporting Variants
SamplesNA19116
Known GenesCYP2A6
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nssv1416691
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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