A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv13405



Internal ID15494257
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:70073930..70079119hg38UCSC Ensembl
Outerchr5:70072574..70080419hg38UCSC Ensembl
Innerchr5:69369757..69374946hg19UCSC Ensembl
Outerchr5:69368401..69376246hg19UCSC Ensembl
Innerchr5:69405513..69410702hg18UCSC Ensembl
Outerchr5:69404157..69412002hg18UCSC Ensembl
Innerchr5:69405513..69410702hg17UCSC Ensembl
Outerchr5:69404157..69412002hg17UCSC Ensembl
Cytoband5q13.2
Allele length
AssemblyAllele length
hg387846
hg197846
hg187846
hg177846
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv10707
Supporting Variants
SamplesNA18980
Known GenesSMA4, SMN1, SMN2
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv13405
Frequency
Sample Size31
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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