A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv12856



Internal ID15488854
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:1614666..1627836hg38UCSC Ensembl
Outerchr5:1602673..1627959hg38UCSC Ensembl
Innerchr5:1614781..1627951hg19UCSC Ensembl
Outerchr5:1602788..1628074hg19UCSC Ensembl
Innerchr5:1667781..1680951hg18UCSC Ensembl
Outerchr5:1655788..1681074hg18UCSC Ensembl
Innerchr5:1667781..1680951hg17UCSC Ensembl
Outerchr5:1655788..1681074hg17UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg3825287
hg1925287
hg1825287
hg1725287
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv10657
Supporting Variants
SamplesNA18552
Known GenesLOC728613
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv12856
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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