A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3890806



Internal ID18838422
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:29900674..29920722hg38UCSC Ensembl
Outerchr6:29881880..29928643hg38UCSC Ensembl
Innerchr6:29868451..29888499hg19UCSC Ensembl
Outerchr6:29849657..29896420hg19UCSC Ensembl
Innerchr6:29976430..29996478hg18UCSC Ensembl
Outerchr6:29957636..30004399hg18UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg3846764
hg1946764
hg1846764
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv25787680, essv25788968, essv25795269, essv25796344, essv25792202, essv25793736, essv25794245, essv25793812, essv25782025, essv25781772, essv25793902, essv25793679, essv25782669, essv25783780, essv25796777, essv25795308, essv25780558, essv25793181, essv25798094, essv25798107, essv25796097, essv25799994, essv25796496, essv25797857, essv25786948, essv25796919, essv25791224, essv25794333, essv25782675, essv25778891, essv25796738, essv25797990, essv25796100, essv25797407, essv25789781, essv25797171, essv25796531, essv25797021, essv25794256, essv25797603, essv25797765, essv25795438, essv25793856, essv25794729, essv25799459, essv25793536, essv25781923, essv25797645, essv25785530, essv25796474, essv25784269, essv25794344, essv25795116, essv25785779, essv25779335, essv25798051, essv25798057, essv25795088, essv25793570, essv25797429
Samples
Known GenesHCG4B, HLA-H
MethodSNP array
Analysis
PlatformIllumina HumanHap 610
Illumina Human OmniExpress
Comments
ReferenceSuktitipat_et_al_2014
Pubmed ID25118596
Accession Number(s)esv3890806
Frequency
Sample Size3017
Observed Gain0
Observed Loss60
Observed Complex0
Frequencyn/a


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