A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3683697



Internal ID19401705
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:197773846..197773967hg38UCSC Ensembl
chr3:197500717..197500838hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38122
hg19122
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv16468403
Samples
Known GenesFYTTD1
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)esv3683697
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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