A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3681123



Internal ID19399131
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:113302972..113303026hg38UCSC Ensembl
chr12:113740777..113740831hg19UCSC Ensembl
Cytoband12q24.13
Allele length
AssemblyAllele length
hg3855
hg1955
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv16502215
Samples
Known GenesSLC8B1
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)esv3681123
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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