A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3676208



Internal ID19047530
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:43647109..43647175hg38UCSC Ensembl
chr6:43614846..43614912hg19UCSC Ensembl
Cytoband6p21.1
Allele length
AssemblyAllele length
hg3867
hg1967
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv16497791
Samples
Known GenesRSPH9
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)esv3676208
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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