A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3667189



Internal ID19385197
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:109715291..109715291hg38UCSC Ensembl
chr5:109050992..109050992hg19UCSC Ensembl
Cytoband5q21.3
Allele length
AssemblyAllele length
hg38322
hg19322
Variant TypeCNV novel sequence insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv16489674
Samples
Known GenesMAN2A1
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)esv3667189
Frequency
Sample Size20
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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