Variant Details

Variant: esv3644417

Internal ID

7031172

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr19:42847842..42889626	hg38	UCSC Ensembl
Inner	chr19:42848342..42889126	hg38	UCSC Ensembl
Outer	chr19:42846842..42890626	hg38	UCSC Ensembl
	chr19:43351994..43393778	hg19	UCSC Ensembl
Inner	chr19:43352494..43393278	hg19	UCSC Ensembl
Outer	chr19:43350994..43394778	hg19	UCSC Ensembl

Cytoband

19q13.2

Allele length

Assembly	Allele length
hg38	41785
hg19	41785

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv16057100, essv16057039, essv16057098, essv16057063, essv16057068, essv16056991, essv16057053, essv16057023, essv16057057, essv16057003, essv16057019, essv16057026, essv16057093, essv16057080, essv16057050, essv16057013, essv16057016, essv16057075, essv16057067, essv16057054, essv16057073, essv16057071, essv16056996, essv16057028, essv16056999, essv16057000, essv16056990, essv16057076, essv16056988, essv16057037, essv16057005, essv16057011, essv16057074, essv16057058, essv16057049, essv16057010, essv16057024, essv16057062, essv16057032, essv16057079, essv16057078, essv16057052, essv16057031, essv16057056, essv16056983, essv16057051, essv16057008, essv16057002, essv16057045, essv16057018, essv16057046, essv16057017, essv16057038, essv16057065, essv16057086, essv16057077, essv16057025, essv16057081, essv16056998, essv16057095, essv16057090, essv16057064, essv16057014, essv16057083, essv16056997, essv16057029, essv16057042, essv16057048, essv16057035, essv16057060, essv16057082, essv16056993, essv16056994, essv16056992, essv16057061, essv16057089, essv16056987, essv16056989, essv16057020, essv16057097, essv16056984, essv16057007, essv16057087, essv16057092, essv16057012, essv16057006, essv16057088, essv16056985, essv16057094, essv16057099, essv16057070, essv16057004, essv16057055, essv16057085, essv16057072, essv16057033, essv16057030, essv16057034, essv16057009, essv16057084, essv16057040, essv16057096, essv16057059, essv16056986, essv16057066, essv16057001, essv16056995, essv16057091, essv16057043, essv16057022, essv16057036, essv16057069, essv16057044, essv16057041, essv16057027, essv16057047, essv16057021, essv16057015

Samples

HG04212, HG00114, HG01746, HG02652, NA19397, NA20877, NA18947, NA12286, HG03965, HG01443, HG00559, NA20899, HG02231, NA20532, HG04002, HG03792, HG02040, NA20517, NA19669, NA20846, HG03782, HG01350, HG02185, NA20589, HG03808, HG01277, HG00599, NA18982, HG03765, HG02521, HG03673, NA12348, HG01843, HG01492, HG03246, HG01528, NA20759, HG01080, HG00632, HG00335, NA18874, HG02067, NA20775, NA18868, HG02187, NA19901, HG02780, HG04029, HG04075, HG02164, HG00675, NA18648, NA12748, HG02479, HG03709, NA20854, HG03908, HG03685, HG01171, HG02152, HG01344, NA18956, HG03547, HG02554, HG02450, HG03428, HG00584, HG00533, HG01845, HG03775, HG03081, HG02221, HG01777, HG03301, HG02429, NA20903, HG00956, HG02649, HG00146, NA20828, HG00463, HG01936, NA18531, HG01625, HG01148, HG00258, NA21113, NA18533, HG02696, NA18950, NA19732, NA20804, NA18992, NA19679, HG03870, HG01620, HG03973, HG03779, NA20887, HG00107, NA19376, HG01861, HG01086, HG01770, HG02238, NA12749, HG04014, HG02679, HG03077, HG01468, HG01914, HG02028, HG03611, HG03856, NA20908, HG01437, HG03886, HG03741

Known Genes

PSG1, PSG10P

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3644417

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	118
Observed Complex	0
Frequency	n/a