Variant Details

Variant: esv3644361

Internal ID

7031117

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr19:40846558..40877202	hg38	UCSC Ensembl
Inner	chr19:40847058..40876702	hg38	UCSC Ensembl
Outer	chr19:40845558..40878202	hg38	UCSC Ensembl
	chr19:41352463..41383107	hg19	UCSC Ensembl
Inner	chr19:41352963..41382607	hg19	UCSC Ensembl
Outer	chr19:41351463..41384107	hg19	UCSC Ensembl

Cytoband

19q13.2

Allele length

Assembly	Allele length
hg38	30645
hg19	30645

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv16055002, essv16055088, essv16055024, essv16055012, essv16055000, essv16055021, essv16054967, essv16054927, essv16054936, essv16054928, essv16055068, essv16054920, essv16055025, essv16055034, essv16055107, essv16055127, essv16055022, essv16054982, essv16055064, essv16055093, essv16055058, essv16054997, essv16054957, essv16055125, essv16054956, essv16055036, essv16054924, essv16055007, essv16055126, essv16055010, essv16054974, essv16054945, essv16055105, essv16055086, essv16055019, essv16055074, essv16054931, essv16055053, essv16055059, essv16055015, essv16054987, essv16054919, essv16055028, essv16054966, essv16054917, essv16055117, essv16055043, essv16054981, essv16055048, essv16055009, essv16054980, essv16055075, essv16054944, essv16055110, essv16054988, essv16055016, essv16054933, essv16055120, essv16054993, essv16054996, essv16055044, essv16055041, essv16055099, essv16054975, essv16054964, essv16054949, essv16055017, essv16054998, essv16054953, essv16055013, essv16054992, essv16055001, essv16054963, essv16055032, essv16054950, essv16055118, essv16055134, essv16054954, essv16055033, essv16055027, essv16055047, essv16054995, essv16054959, essv16055051, essv16055092, essv16055115, essv16055076, essv16055061, essv16054978, essv16054951, essv16055052, essv16055063, essv16054976, essv16055085, essv16055038, essv16055079, essv16055055, essv16055121, essv16055082, essv16054970, essv16054925, essv16055081, essv16055132, essv16055124, essv16055050, essv16055066, essv16055042, essv16055131, essv16055040, essv16055008, essv16054932, essv16055113, essv16055006, essv16055046, essv16055014, essv16054990, essv16054937, essv16055130, essv16055030, essv16055114, essv16055116, essv16054948, essv16054943, essv16055035, essv16055045, essv16054929, essv16055056, essv16055003, essv16055101, essv16055039, essv16055071, essv16055096, essv16054940, essv16055004, essv16055084, essv16054968, essv16054984, essv16055122, essv16055128, essv16054923, essv16054941, essv16054994, essv16054955, essv16054921, essv16055026, essv16054986, essv16054942, essv16054926, essv16055067, essv16055065, essv16055029, essv16055078, essv16054977, essv16055098, essv16055087, essv16055060, essv16054969, essv16055080, essv16054985, essv16055111, essv16055057, essv16054983, essv16055109, essv16055108, essv16054938, essv16054971, essv16055112, essv16054973, essv16055090, essv16055119, essv16054960, essv16055104, essv16055023, essv16055097, essv16055094, essv16055037, essv16054922, essv16055100, essv16054947, essv16055123, essv16055102, essv16055062, essv16054935, essv16055103, essv16054930, essv16055020, essv16055031, essv16055054, essv16055005, essv16054961, essv16054934, essv16054946, essv16054918, essv16054958, essv16055129, essv16054991, essv16054979, essv16055077, essv16055095, essv16055091, essv16055070, essv16055018, essv16054999, essv16054962, essv16055069, essv16055049, essv16054939, essv16055073, essv16055089, essv16055083, essv16054952, essv16054972, essv16055072, essv16055011, essv16054989, essv16055133, essv16054965, essv16055106

Samples

HG03439, NA18562, NA18965, HG02760, HG01926, NA18997, NA18998, NA18745, HG00442, HG00592, HG00608, HG00102, NA12286, HG01443, NA11829, HG01359, HG01855, NA18565, HG02648, HG02035, HG01326, NA18599, HG02231, NA18979, HG00315, NA18999, HG03115, HG04094, HG01806, NA20805, HG00566, NA21137, NA18959, NA18616, HG03792, HG02688, HG02536, NA12400, HG02023, NA12750, NA19067, NA18627, HG03603, NA19076, NA19005, NA18944, NA18940, NA12812, HG03770, HG00109, HG02016, HG02151, HG01853, NA20890, HG02087, HG00599, HG00448, HG02840, NA18619, HG02521, NA18960, NA18942, HG03604, NA19062, NA18574, NA18642, HG01354, HG03978, HG01242, NA19079, HG03594, HG01859, HG00590, NA20910, NA18611, HG03868, HG01134, NA20539, NA19923, NA18970, HG01067, NA20896, HG02736, HG01757, HG01072, HG01849, NA19075, NA18617, NA18966, HG01973, NA19087, NA12815, HG03352, NA21129, HG01198, NA18985, HG03055, NA18975, NA20533, NA18973, NA18954, NA21105, HG00675, HG00464, NA19007, HG00313, HG02442, HG03902, NA18605, HG02136, HG01867, HG01841, NA19091, HG02070, HG00596, HG01595, HG01104, NA19077, HG02697, NA21119, HG02057, HG01515, HG02084, NA18516, HG02775, HG01845, HG02728, HG02522, HG02165, NA20832, NA18534, HG00619, NA18981, NA18757, NA18537, HG03967, HG01102, HG03301, HG01311, NA19449, NA19084, HG03136, NA19655, HG03660, HG00684, HG02649, NA19113, HG04017, HG03953, HG03971, NA19009, NA18963, HG03752, HG03898, HG02127, NA18945, HG01530, HG03743, HG01992, NA21087, NA18978, NA18632, HG03848, NA19390, NA18961, NA18952, NA18543, HG00625, HG02064, NA20804, NA19090, HG02651, HG01396, HG01598, HG00607, NA19310, HG01113, HG02580, NA12347, HG03681, HG01862, HG00620, NA20887, NA19078, HG02128, NA18971, HG02401, HG00381, HG01935, NA19472, HG03977, NA18987, HG02079, HG02032, NA20334, HG01846, NA18994, HG03060, HG02462, NA21093, HG03916, HG00698, HG03872, NA19780, NA18972, HG04171, HG00343, HG00105, HG00595, NA18984, HG02763, HG03922, HG02778, HG02020, HG00759, NA19063, NA18740, HG00554

Known Genes

CYP2A6, CYP2A7

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3644361

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	218
Observed Complex	0
Frequency	n/a