Variant Details

Variant: esv3640581

Internal ID

7027356

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr17:41227950..41239873	hg38	UCSC Ensembl
Inner	chr17:41227950..41239873	hg38	UCSC Ensembl
Outer	chr17:41227450..41240373	hg38	UCSC Ensembl
	chr17:39384202..39396125	hg19	UCSC Ensembl
Inner	chr17:39384202..39396125	hg19	UCSC Ensembl
Outer	chr17:39383702..39396625	hg19	UCSC Ensembl

Cytoband

17q21.2

Allele length

Assembly	Allele length
hg38	11924
hg19	11924

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv15676241, essv15676186, essv15676096, essv15676068, essv15676163, essv15676216, essv15676075, essv15676316, essv15676238, essv15676093, essv15676103, essv15676083, essv15676325, essv15676344, essv15676324, essv15676268, essv15676171, essv15676270, essv15676172, essv15676245, essv15676203, essv15676321, essv15676231, essv15676320, essv15676299, essv15676194, essv15676326, essv15676303, essv15676121, essv15676269, essv15676090, essv15676153, essv15676261, essv15676135, essv15676081, essv15676343, essv15676338, essv15676111, essv15676363, essv15676158, essv15676076, essv15676052, essv15676254, essv15676239, essv15676332, essv15676156, essv15676260, essv15676323, essv15676301, essv15676351, essv15676337, essv15676273, essv15676257, essv15676177, essv15676230, essv15676264, essv15676110, essv15676201, essv15676169, essv15676209, essv15676133, essv15676259, essv15676305, essv15676131, essv15676329, essv15676275, essv15676211, essv15676354, essv15676192, essv15676309, essv15676295, essv15676262, essv15676291, essv15676244, essv15676126, essv15676181, essv15676249, essv15676175, essv15676198, essv15676265, essv15676304, essv15676350, essv15676307, essv15676184, essv15676224, essv15676051, essv15676132, essv15676300, essv15676070, essv15676197, essv15676165, essv15676115, essv15676109, essv15676112, essv15676139, essv15676311, essv15676058, essv15676236, essv15676272, essv15676207, essv15676202, essv15676308, essv15676140, essv15676178, essv15676358, essv15676314, essv15676161, essv15676188, essv15676285, essv15676152, essv15676252, essv15676101, essv15676055, essv15676319, essv15676185, essv15676129, essv15676287, essv15676328, essv15676289, essv15676242, essv15676187, essv15676100, essv15676219, essv15676160, essv15676293, essv15676276, essv15676341, essv15676204, essv15676296, essv15676345, essv15676213, essv15676334, essv15676214, essv15676120, essv15676072, essv15676226, essv15676074, essv15676306, essv15676266, essv15676148, essv15676286, essv15676330, essv15676086, essv15676182, essv15676134, essv15676116, essv15676149, essv15676362, essv15676315, essv15676282, essv15676227, essv15676233, essv15676279, essv15676069, essv15676297, essv15676240, essv15676225, essv15676180, essv15676335, essv15676151, essv15676099, essv15676105, essv15676144, essv15676298, essv15676356, essv15676223, essv15676173, essv15676147, essv15676277, essv15676088, essv15676155, essv15676127, essv15676302, essv15676079, essv15676283, essv15676237, essv15676193, essv15676222, essv15676333, essv15676095, essv15676084, essv15676281, essv15676061, essv15676118, essv15676221, essv15676360, essv15676310, essv15676056, essv15676267, essv15676085, essv15676263, essv15676062, essv15676317, essv15676274, essv15676215, essv15676166, essv15676137, essv15676071, essv15676246, essv15676087, essv15676063, essv15676170, essv15676250, essv15676190, essv15676234, essv15676154, essv15676142, essv15676159, essv15676349, essv15676168, essv15676243, essv15676217, essv15676365, essv15676271, essv15676164, essv15676176, essv15676124, essv15676091, essv15676278, essv15676064, essv15676290, essv15676102, essv15676288, essv15676280, essv15676255, essv15676060, essv15676199, essv15676113, essv15676247, essv15676191, essv15676258, essv15676117, essv15676057, essv15676340, essv15676065, essv15676123, essv15676167, essv15676107, essv15676130, essv15676212, essv15676284, essv15676251, essv15676235, essv15676195, essv15676189, essv15676200, essv15676125, essv15676073, essv15676089, essv15676366, essv15676364, essv15676174, essv15676355, essv15676359, essv15676318, essv15676097, essv15676339, essv15676322, essv15676066, essv15676136, essv15676108, essv15676106, essv15676218, essv15676206, essv15676050, essv15676128, essv15676067, essv15676078, essv15676229, essv15676336, essv15676208, essv15676348, essv15676256, essv15676119, essv15676361, essv15676352, essv15676157, essv15676098, essv15676183, essv15676138, essv15676253, essv15676347, essv15676232, essv15676353, essv15676141, essv15676092, essv15676080, essv15676053, essv15676357, essv15676082, essv15676146, essv15676179, essv15676312, essv15676122, essv15676077, essv15676220, essv15676196, essv15676210, essv15676150, essv15676145, essv15676331, essv15676059, essv15676342, essv15676104, essv15676248, essv15676346, essv15676054, essv15676294, essv15676143, essv15676114, essv15676313, essv15676327, essv15676292, essv15676162, essv15676205, essv15676094, essv15676228

Samples

HG01986, HG01985, NA20339, HG02944, HG02496, HG02628, HG02481, NA19909, HG01443, HG03052, NA18508, NA19399, HG03175, HG03241, HG03449, HG02419, HG02836, HG02012, NA19350, HG02804, HG03521, HG03455, NA18878, NA18504, HG03295, NA19377, HG03515, HG03193, HG02888, HG01461, NA19443, NA20356, NA19920, HG03069, NA18510, HG03478, HG03572, HG03133, NA19171, HG03436, NA19379, HG02621, HG03385, HG03168, NA19315, HG03091, HG02840, HG02595, NA19457, HG02054, HG03224, NA19384, NA20291, HG02981, HG02561, NA20278, NA18868, HG02634, HG03212, NA19172, HG02427, HG03073, HG03394, NA18867, NA19027, HG02716, HG03343, HG02820, HG03132, HG03363, HG03061, HG03088, NA19175, HG02678, NA19184, NA19455, HG03457, HG01941, HG03575, HG03081, HG02014, HG03027, HG02878, HG01889, HG03301, NA11919, HG02577, NA19042, HG03388, HG03446, HG01101, NA19099, HG03451, HG03046, HG02666, NA19452, NA18523, NA19318, HG02332, HG02635, HG02896, HG02594, NA18858, HG01956, HG02675, HG02772, HG03064, NA19017, HG01148, NA19309, NA19390, NA19256, NA19147, NA18517, HG03437, NA20276, HG03539, HG02010, HG02721, HG03458, HG03117, HG01396, HG02982, NA20778, HG02274, HG03473, HG02464, HG02317, NA19783, HG03103, HG02771, NA19328, NA19117, HG02971, HG02095, HG03097, HG03066, NA19468, HG02107, HG03063, HG03060, NA19185, HG03351, NA19102, HG02013, NA18876, NA19116, NA19711, HG01479, HG02947, HG02763, NA19430, NA19129, NA19316, NA19312, HG02805, NA12154, HG03198, HG02643, HG03303, NA19431, HG03265, HG03271, HG02760, HG02614, HG03096, HG02339, HG03559, HG02890, NA19141, NA19700, HG02610, HG02583, HG03163, NA19914, NA19332, HG02702, NA18507, HG02852, NA18877, HG02891, NA19092, HG03100, HG03518, NA20346, HG03577, HG02895, HG03095, HG03074, HG03086, NA19201, NA18489, NA19448, HG02485, HG01488, HG02325, NA19198, HG02620, NA19916, HG02549, HG03105, NA18498, NA20513, HG02922, HG02111, HG03079, NA19038, NA19922, NA19404, HG02703, HG03556, NA18874, HG03268, HG02573, NA19917, NA19137, HG01369, NA19317, NA19026, NA19901, NA19189, NA18520, HG02946, HG03058, NA19445, HG03055, HG03583, HG02882, NA19451, HG03048, HG01524, HG02570, NA19210, NA19437, NA19707, HG02233, NA19462, NA19152, HG03291, HG02511, NA19327, NA19982, NA18915, HG02450, HG02953, HG01989, NA18910, HG02968, HG02976, HG02221, HG03124, HG03294, NA20299, NA19118, HG03136, HG03476, HG03202, NA18499, HG03397, NA19031, NA18856, HG01241, HG02283, NA18853, HG03571, HG03391, NA19756, HG03354, NA19436, NA19308, NA19206, HG03028, HG02282, NA19321, NA19108, HG03461, HG03367, HG02983, HG01894, NA19037, HG02923, NA19144, HG03433, NA19741, HG01108, HG03557, HG03108, HG03084, NA20357, NA19323, HG03432, HG03039, NA20348, NA19248, HG02974, HG02970, HG01556, HG03025, HG02938, HG02053, HG03258, HG02676, HG02679, NA19096, NA19213, HG01883, HG03445, HG02861, NA18505, NA19146, NA18511, HG01886, HG02808, HG02629, HG03129, HG02343, NA19153

Known Genes

KRTAP9-3, KRTAP9-8

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3640581

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	317
Observed Complex	0
Frequency	n/a