Variant Details

Variant: esv3637178

Internal ID

6677285

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr15:88892401..88893849	hg38	UCSC Ensembl
Inner	chr15:88892401..88893849	hg38	UCSC Ensembl
Outer	chr15:88892128..88894157	hg38	UCSC Ensembl
	chr15:89435632..89437080	hg19	UCSC Ensembl
Inner	chr15:89435632..89437080	hg19	UCSC Ensembl
Outer	chr15:89435359..89437388	hg19	UCSC Ensembl

Cytoband

15q26.1

Allele length

Assembly	Allele length
hg38	1449
hg19	1449

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv15316969, essv15316965, essv15316970, essv15316975, essv15316977, essv15316971, essv15316960, essv15316991, essv15316985, essv15316973, essv15316968, essv15316976, essv15316979, essv15316967, essv15316956, essv15316978, essv15316990, essv15316955, essv15316966, essv15316987, essv15316958, essv15316994, essv15316957, essv15316974, essv15316962, essv15316995, essv15316988, essv15316964, essv15316989, essv15316959, essv15316954, essv15316992, essv15316983, essv15316982, essv15316952, essv15316961, essv15316951, essv15316963, essv15316993, essv15316984, essv15316981, essv15316980, essv15316972, essv15316986, essv15316953

Samples

NA20899, NA20878, HG04211, HG03941, HG04001, HG04156, HG02792, HG03796, HG03705, HG03976, NA20911, HG04144, HG03663, HG03830, NA21109, HG04106, HG03624, HG03744, HG03585, NA20892, NA20895, HG04019, NA21098, NA20875, HG03660, NA21141, NA20859, NA21112, HG04017, HG04063, HG04118, HG04188, HG02651, NA21126, NA20887, NA20888, HG03789, NA21088, NA20868, NA20847, NA20849, NA21133, HG03716, HG03925, HG03611

Known Genes

HAPLN3

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3637178

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	45
Observed Complex	0
Frequency	n/a