Variant Details

Variant: esv3625135

Internal ID

6665286

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr11:3217506..3222857	hg38	UCSC Ensembl
Inner	chr11:3217507..3222857	hg38	UCSC Ensembl
Outer	chr11:3217506..3222858	hg38	UCSC Ensembl
	chr11:3238736..3244087	hg19	UCSC Ensembl
Inner	chr11:3238737..3244087	hg19	UCSC Ensembl
Outer	chr11:3238736..3244088	hg19	UCSC Ensembl

Cytoband

11p15.4

Allele length

Assembly	Allele length
hg38	5352
hg19	5352

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv13993728, essv13993752, essv13993740, essv13993739, essv13993687, essv13993691, essv13993661, essv13993682, essv13993652, essv13993786, essv13993714, essv13993694, essv13993770, essv13993699, essv13993666, essv13993735, essv13993663, essv13993665, essv13993743, essv13993685, essv13993800, essv13993785, essv13993769, essv13993651, essv13993657, essv13993645, essv13993756, essv13993709, essv13993746, essv13993718, essv13993677, essv13993674, essv13993783, essv13993804, essv13993649, essv13993799, essv13993794, essv13993766, essv13993787, essv13993784, essv13993772, essv13993686, essv13993798, essv13993692, essv13993711, essv13993742, essv13993654, essv13993655, essv13993782, essv13993725, essv13993668, essv13993779, essv13993801, essv13993646, essv13993781, essv13993768, essv13993792, essv13993737, essv13993680, essv13993741, essv13993778, essv13993705, essv13993780, essv13993757, essv13993689, essv13993777, essv13993704, essv13993758, essv13993647, essv13993662, essv13993796, essv13993730, essv13993721, essv13993696, essv13993759, essv13993679, essv13993754, essv13993695, essv13993767, essv13993656, essv13993722, essv13993724, essv13993660, essv13993789, essv13993713, essv13993717, essv13993715, essv13993790, essv13993763, essv13993703, essv13993733, essv13993788, essv13993775, essv13993776, essv13993751, essv13993707, essv13993706, essv13993727, essv13993650, essv13993762, essv13993765, essv13993734, essv13993664, essv13993658, essv13993753, essv13993681, essv13993670, essv13993678, essv13993701, essv13993747, essv13993676, essv13993644, essv13993795, essv13993738, essv13993729, essv13993702, essv13993653, essv13993761, essv13993659, essv13993745, essv13993672, essv13993683, essv13993726, essv13993793, essv13993764, essv13993700, essv13993802, essv13993791, essv13993736, essv13993716, essv13993805, essv13993731, essv13993748, essv13993693, essv13993771, essv13993698, essv13993712, essv13993774, essv13993684, essv13993710, essv13993673, essv13993667, essv13993708, essv13993750, essv13993797, essv13993688, essv13993723, essv13993690, essv13993648, essv13993755, essv13993773, essv13993671, essv13993760, essv13993720, essv13993719, essv13993732, essv13993749, essv13993675, essv13993697, essv13993803, essv13993669, essv13993744

Samples

HG00235, NA19648, HG01402, HG01303, HG03965, HG03731, HG03052, HG01885, NA20899, HG00100, HG01188, NA21092, HG02419, HG01970, NA20813, NA20512, HG00181, HG02476, NA20805, HG03772, HG03667, NA19669, HG02688, NA19098, NA19446, HG04022, NA20850, HG02952, HG01064, NA21130, NA20756, HG02756, HG03736, HG01492, NA21108, NA19384, NA19038, HG03793, HG04214, HG04183, HG03897, HG02703, HG01080, NA06984, HG01170, HG03045, HG02642, HG01284, NA19385, NA19317, HG04020, HG01198, HG00159, HG00365, HG00739, NA21106, HG01784, HG01136, HG03785, NA12760, NA19657, HG03861, HG01200, NA20787, HG02345, HG02582, HG02236, NA12872, HG02511, NA19327, HG01612, NA20895, HG01880, HG01323, HG04180, HG03919, NA20770, HG03781, HG02221, HG04235, HG03823, HG02789, HG01047, HG01777, HG01392, HG01094, HG03085, HG01073, NA11919, HG01512, HG03382, HG03136, NA21124, HG03951, HG02787, NA20538, HG04173, HG01791, HG03740, HG03643, HG03625, HG01593, NA20282, HG03971, HG03634, HG02724, HG03969, HG03006, NA19756, HG01936, HG02219, HG01697, HG04118, HG01625, HG01107, HG01204, NA21143, HG04025, NA19440, NA18909, HG01190, HG03367, NA12775, NA19473, NA12272, HG01362, NA19435, HG00638, NA19090, HG00278, HG01174, HG01623, HG03869, HG02839, HG01620, HG02464, NA21094, HG03039, NA20847, NA21090, HG03863, HG02654, HG01085, HG03998, HG03410, NA19661, NA19755, HG02465, NA20763, HG03890, HG02284, NA20585, HG04153, HG03698, HG03686, HG01695, HG01437, HG00553, NA19153, NA11832, HG03989, HG01747

Known Genes

MRGPRG, MRGPRG-AS1

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3625135

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	162
Observed Complex	0
Frequency	n/a