Variant Details

Variant: esv3624105

Internal ID

7010961

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr10:87222342..87359039	hg38	UCSC Ensembl
Inner	chr10:87222842..87358539	hg38	UCSC Ensembl
Outer	chr10:87221342..87360039	hg38	UCSC Ensembl
	chr10:88982099..89118796	hg19	UCSC Ensembl
Inner	chr10:88982599..89118296	hg19	UCSC Ensembl
Outer	chr10:88981099..89119796	hg19	UCSC Ensembl

Cytoband

10q23.2

Allele length

Assembly	Allele length
hg38	136698
hg19	136698

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv13884235, essv13884239, essv13884206, essv13884212, essv13884233, essv13884221, essv13884209, essv13884217, essv13884253, essv13884211, essv13884198, essv13884231, essv13884182, essv13884183, essv13884259, essv13884241, essv13884180, essv13884216, essv13884215, essv13884199, essv13884184, essv13884243, essv13884276, essv13884213, essv13884230, essv13884227, essv13884260, essv13884236, essv13884270, essv13884245, essv13884228, essv13884255, essv13884222, essv13884262, essv13884275, essv13884240, essv13884225, essv13884189, essv13884238, essv13884237, essv13884265, essv13884201, essv13884256, essv13884219, essv13884251, essv13884277, essv13884200, essv13884248, essv13884203, essv13884214, essv13884188, essv13884268, essv13884187, essv13884191, essv13884246, essv13884196, essv13884271, essv13884210, essv13884181, essv13884202, essv13884195, essv13884257, essv13884272, essv13884193, essv13884234, essv13884232, essv13884247, essv13884208, essv13884186, essv13884261, essv13884242, essv13884190, essv13884197, essv13884185, essv13884258, essv13884204, essv13884252, essv13884264, essv13884263, essv13884226, essv13884229, essv13884220, essv13884274, essv13884207, essv13884194, essv13884254, essv13884250, essv13884267, essv13884218, essv13884273, essv13884244, essv13884224, essv13884269, essv13884205, essv13884249, essv13884223, essv13884192, essv13884266

Samples

HG04210, NA20891, HG04222, HG02702, HG04202, HG03717, HG02661, HG03589, HG03941, HG02688, NA19920, NA19314, HG03680, HG01694, NA18597, HG03705, HG02491, HG02087, HG04042, HG02687, NA18619, HG03905, HG01816, NA19649, HG04131, HG00334, HG03762, HG01859, HG03793, NA12282, HG03887, NA20896, NA12044, HG01527, NA19075, HG03693, HG00309, HG03814, HG02780, HG00253, HG01851, HG02737, HG01784, HG03697, NA20892, HG03685, HG00332, HG00328, HG01768, HG03775, HG02728, HG01345, HG03805, HG03756, HG01029, HG01447, HG01102, HG03563, HG03858, HG01791, HG04189, HG00140, HG02601, HG01334, NA06985, HG03006, HG03755, HG02219, NA18541, HG04200, HG00258, NA20773, HG00383, HG04216, NA19834, HG00353, HG03838, NA12873, NA12046, NA12874, HG01489, NA21125, NA20888, HG00672, HG01765, HG02974, HG04015, NA19474, NA20758, NA18983, HG00372, HG01464, NA07000, NA19063, NA12154, NA20908, NA21091, HG03741

Known Genes

LOC439994, NUTM2A, NUTM2A-AS1, NUTM2D

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3624105

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	98
Observed Complex	0
Frequency	n/a