Variant Details

Variant: esv3621777

Internal ID

6661953

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr9:127270849..127272516	hg38	UCSC Ensembl
Inner	chr9:127270854..127272512	hg38	UCSC Ensembl
Outer	chr9:127270845..127272521	hg38	UCSC Ensembl
	chr9:130033128..130034795	hg19	UCSC Ensembl
Inner	chr9:130033133..130034791	hg19	UCSC Ensembl
Outer	chr9:130033124..130034800	hg19	UCSC Ensembl

Cytoband

9q33.3

Allele length

Assembly	Allele length
hg38	1668
hg19	1668

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv13621804, essv13621711, essv13621778, essv13621708, essv13621652, essv13621702, essv13621787, essv13621760, essv13621767, essv13621678, essv13621777, essv13621742, essv13621762, essv13621655, essv13621729, essv13621648, essv13621799, essv13621697, essv13621677, essv13621772, essv13621819, essv13621670, essv13621647, essv13621660, essv13621753, essv13621795, essv13621782, essv13621789, essv13621773, essv13621731, essv13621713, essv13621779, essv13621710, essv13621803, essv13621761, essv13621680, essv13621664, essv13621666, essv13621818, essv13621721, essv13621771, essv13621650, essv13621739, essv13621800, essv13621689, essv13621700, essv13621781, essv13621765, essv13621797, essv13621791, essv13621788, essv13621734, essv13621661, essv13621653, essv13621657, essv13621808, essv13621786, essv13621706, essv13621783, essv13621685, essv13621810, essv13621740, essv13621723, essv13621822, essv13621768, essv13621790, essv13621737, essv13621722, essv13621662, essv13621681, essv13621726, essv13621679, essv13621784, essv13621751, essv13621793, essv13621733, essv13621794, essv13621693, essv13621744, essv13621709, essv13621674, essv13621749, essv13621785, essv13621663, essv13621763, essv13621813, essv13621812, essv13621667, essv13621698, essv13621671, essv13621736, essv13621727, essv13621801, essv13621738, essv13621694, essv13621718, essv13621703, essv13621699, essv13621807, essv13621814, essv13621798, essv13621766, essv13621705, essv13621769, essv13621823, essv13621792, essv13621701, essv13621755, essv13621686, essv13621644, essv13621717, essv13621815, essv13621816, essv13621712, essv13621716, essv13621805, essv13621770, essv13621756, essv13621802, essv13621673, essv13621656, essv13621748, essv13621645, essv13621775, essv13621743, essv13621764, essv13621745, essv13621658, essv13621758, essv13621672, essv13621687, essv13621704, essv13621684, essv13621746, essv13621690, essv13621757, essv13621691, essv13621820, essv13621651, essv13621665, essv13621730, essv13621759, essv13621714, essv13621817, essv13621659, essv13621715, essv13621728, essv13621750, essv13621747, essv13621796, essv13621776, essv13621741, essv13621774, essv13621754, essv13621676, essv13621806, essv13621668, essv13621752, essv13621654, essv13621649, essv13621725, essv13621720, essv13621695, essv13621809, essv13621811, essv13621675, essv13621719, essv13621724, essv13621821, essv13621682, essv13621646, essv13621707, essv13621683, essv13621692, essv13621732, essv13621780, essv13621735, essv13621688, essv13621669, essv13621696

Samples

NA19431, HG03196, HG03514, NA19394, HG01986, NA19028, HG02890, HG03366, HG02944, HG02628, HG01098, NA19703, HG01462, NA19914, HG03517, NA18507, HG01188, HG03241, NA18877, HG03130, NA20321, HG02323, HG02476, NA20298, HG03455, NA20332, HG03518, HG03515, HG03297, NA20346, HG03139, NA19443, NA19190, NA20356, NA19920, HG03572, NA19374, HG03082, NA19379, NA19201, HG01064, NA20320, HG01167, HG02840, HG02595, NA19131, HG02860, NA18916, HG02645, NA19197, HG03246, HG03578, NA19138, HG03224, HG03040, NA19904, HG02816, NA20291, HG02922, HG02281, HG03520, HG03556, NA18868, HG02634, NA19137, HG02461, HG01308, NA19385, NA19172, NA19471, HG03352, NA19722, NA19901, NA19189, NA19239, HG01058, HG03267, HG03073, HG02882, HG02477, HG03048, HG02879, HG02439, HG03511, HG03088, HG02582, NA19184, NA19327, NA19913, NA19455, NA19236, NA18915, HG01989, NA20126, NA18871, HG03159, HG02968, HG01880, HG02976, HG02757, HG03123, HG03085, HG02577, HG02445, NA18499, HG03078, HG03571, HG02585, HG02332, HG02635, NA19395, HG02594, NA18858, HG03109, HG02568, HG01956, HG01107, HG03567, HG02772, HG02255, NA19017, HG02455, NA19206, HG03028, HG02807, HG02667, HG03240, NA19149, NA19147, HG02799, NA19473, HG02983, HG02721, HG03458, HG02923, NA18865, HG03469, HG03433, HG03473, HG01108, HG03557, HG02558, HG03103, NA19475, HG03084, HG02771, NA19323, NA19117, HG03039, HG01577, HG02974, HG02095, HG03097, HG03066, HG02646, NA19468, HG02053, HG02107, HG03060, HG01085, HG02462, NA20289, HG02676, HG02679, NA19096, NA19213, HG03538, HG03470, HG02052, HG03445, HG03162, NA19430, HG02855, NA19316, HG03376, HG02465, HG02808, HG02006, NA19429, HG00553

Known Genes

GARNL3

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3621777

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	180
Observed Complex	0
Frequency	n/a