Variant Details

Variant: esv3609003

Internal ID

6649236

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr6:52761458..52762349	hg38	UCSC Ensembl
Inner	chr6:52761608..52762199	hg38	UCSC Ensembl
Outer	chr6:52761308..52762499	hg38	UCSC Ensembl
	chr6:52626256..52627147	hg19	UCSC Ensembl
Inner	chr6:52626406..52626997	hg19	UCSC Ensembl
Outer	chr6:52626106..52627297	hg19	UCSC Ensembl

Cytoband

6p12.2

Allele length

Assembly	Allele length
hg38	892
hg19	892

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv12351378, essv12351365, essv12351430, essv12351360, essv12351434, essv12351490, essv12351423, essv12351340, essv12351357, essv12351484, essv12351363, essv12351512, essv12351374, essv12351510, essv12351336, essv12351346, essv12351371, essv12351496, essv12351431, essv12351349, essv12351486, essv12351361, essv12351474, essv12351337, essv12351338, essv12351482, essv12351473, essv12351506, essv12351351, essv12351393, essv12351485, essv12351375, essv12351405, essv12351369, essv12351396, essv12351386, essv12351466, essv12351445, essv12351394, essv12351344, essv12351389, essv12351401, essv12351449, essv12351427, essv12351402, essv12351455, essv12351395, essv12351422, essv12351452, essv12351381, essv12351463, essv12351472, essv12351476, essv12351380, essv12351350, essv12351465, essv12351385, essv12351392, essv12351429, essv12351421, essv12351428, essv12351390, essv12351347, essv12351379, essv12351448, essv12351358, essv12351499, essv12351442, essv12351483, essv12351468, essv12351493, essv12351432, essv12351372, essv12351419, essv12351354, essv12351464, essv12351505, essv12351400, essv12351440, essv12351489, essv12351479, essv12351497, essv12351491, essv12351424, essv12351462, essv12351420, essv12351377, essv12351399, essv12351413, essv12351494, essv12351376, essv12351438, essv12351477, essv12351507, essv12351418, essv12351469, essv12351441, essv12351366, essv12351359, essv12351446, essv12351403, essv12351433, essv12351436, essv12351480, essv12351368, essv12351356, essv12351495, essv12351387, essv12351451, essv12351450, essv12351352, essv12351475, essv12351355, essv12351444, essv12351511, essv12351341, essv12351439, essv12351367, essv12351397, essv12351481, essv12351339, essv12351409, essv12351478, essv12351508, essv12351342, essv12351498, essv12351417, essv12351391, essv12351425, essv12351411, essv12351353, essv12351415, essv12351410, essv12351412, essv12351383, essv12351488, essv12351500, essv12351458, essv12351492, essv12351398, essv12351504, essv12351384, essv12351388, essv12351461, essv12351343, essv12351416, essv12351501, essv12351362, essv12351426, essv12351471, essv12351414, essv12351348, essv12351364, essv12351404, essv12351373, essv12351443, essv12351345, essv12351509, essv12351407, essv12351456, essv12351435, essv12351408, essv12351459, essv12351454, essv12351503, essv12351382, essv12351467, essv12351447, essv12351370, essv12351470, essv12351406, essv12351502, essv12351453, essv12351437, essv12351487, essv12351457, essv12351460

Samples

HG01441, HG01372, HG00734, HG01926, HG02291, NA18605, HG02272, HG01250, HG01942, NA18561, HG01941, HG01089, HG01205, HG01342, HG01944, HG01970, HG02060, NA18570, HG01935, NA20299, HG01927, NA19670, HG01197, NA19788, HG02104, NA19795, HG00428, HG01174, HG00553, HG02105, HG00739, HG01131, HG00701, HG01954, HG01188, HG01344, HG01461, HG01577, NA19678, HG01134, HG01961, NA19701, HG00737, HG02150, HG01936, NA19780, HG01348, HG01950, HG01551, HG01968, NA19761, NA19776, NA19654, HG01133, HG01435, HG01468, NA20770, HG01917, HG02259, HG01254, HG02008, NA19726, HG01982, HG02390, HG01086, HG01363, HG01384, HG01140, NA19054, HG01456, NA19735, HG01392, NA19652, NA18960, HG01938, NA18563, HG02292, HG01572, HG01395, HG01272, HG02090, HG01556, HG01360, HG01977, HG01997, HG02348, HG01113, HG01136, HG00637, NA19681, NA19663, HG01362, NA19728, NA19676, HG01443, HG01974, HG01948, HG02304, NA19786, HG01097, HG01280, NA19785, NA18747, NA19759, NA19771, HG01413, NA18572, HG02285, NA19716, HG02278, NA19731, HG01369, HG01356, HG01923, HG02266, HG01080, HG02147, HG01494, NA19720, HG02265, HG02299, NA20891, HG01149, HG01921, HG01991, HG02026, HG02374, NA18606, HG01933, HG01979, HG02345, HG01565, HG02301, NA19729, HG01393, HG01971, HG01973, HG00611, HG01345, HG01939, HG01953, HG01269, NA19741, HG01893, NA20274, NA19719, NA19755, HG02262, HG01992, NA19740, NA18946, NA19770, HG01464, NA19749, NA19717, NA19655, HG01947, HG01058, HG01366, NA19732, HG01108, HG01951, HG02271, HG02286, HG01119, HG01892, HG01462, HG01489, HG02188, NA19758, HG01932, HG01976, HG01980, HG02512, HG01354, HG01578, HG02253

Known Genes

GSTA2

Method

Sequencing

Analysis

Platform

Multiple platforms

Comments

Reference

1000_Genomes_Consortium_Phase_3

Pubmed ID

21293372

Accession Number(s)

esv3609003

Frequency

Sample Size	2504
Observed Gain	0
Observed Loss	177
Observed Complex	0
Frequency	n/a