A curated catalogue of human genomic structural variation




Variant Details

Variant: esv3608596



Internal ID6995520
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:32548410..32553495hg38UCSC Ensembl
Innerchr6:32548410..32553495hg38UCSC Ensembl
Outerchr6:32547910..32553995hg38UCSC Ensembl
chr6:32516187..32521272hg19UCSC Ensembl
Innerchr6:32516187..32521272hg19UCSC Ensembl
Outerchr6:32515687..32521772hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg385086
hg195086
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv12279581, essv12279786, essv12279636, essv12279598, essv12279687, essv12279657, essv12279783, essv12279679, essv12279675, essv12279589, essv12279653, essv12279564, essv12279793, essv12279733, essv12279731, essv12279627, essv12279629, essv12279784, essv12279652, essv12279745, essv12279668, essv12279724, essv12279648, essv12279638, essv12279604, essv12279681, essv12279791, essv12279601, essv12279558, essv12279761, essv12279646, essv12279727, essv12279567, essv12279737, essv12279703, essv12279691, essv12279626, essv12279715, essv12279728, essv12279776, essv12279790, essv12279644, essv12279634, essv12279572, essv12279738, essv12279773, essv12279795, essv12279590, essv12279616, essv12279610, essv12279713, essv12279623, essv12279756, essv12279716, essv12279690, essv12279597, essv12279602, essv12279576, essv12279655, essv12279689, essv12279580, essv12279606, essv12279769, essv12279759, essv12279767, essv12279618, essv12279673, essv12279770, essv12279780, essv12279573, essv12279684, essv12279697, essv12279782, essv12279630, essv12279643, essv12279763, essv12279596, essv12279595, essv12279717, essv12279662, essv12279663, essv12279640, essv12279569, essv12279730, essv12279649, essv12279695, essv12279772, essv12279718, essv12279696, essv12279680, essv12279741, essv12279639, essv12279766, essv12279666, essv12279677, essv12279735, essv12279615, essv12279667, essv12279670, essv12279779, essv12279685, essv12279594, essv12279725, essv12279694, essv12279709, essv12279556, essv12279732, essv12279760, essv12279659, essv12279750, essv12279720, essv12279650, essv12279614, essv12279764, essv12279719, essv12279635, essv12279603, essv12279582, essv12279768, essv12279622, essv12279577, essv12279688, essv12279787, essv12279726, essv12279698, essv12279699, essv12279672, essv12279583, essv12279752, essv12279555, essv12279706, essv12279631, essv12279605, essv12279551, essv12279585, essv12279625, essv12279552, essv12279575, essv12279637, essv12279722, essv12279757, essv12279613, essv12279658, essv12279620, essv12279593, essv12279607, essv12279707, essv12279563, essv12279660, essv12279711, essv12279692, essv12279674, essv12279701, essv12279645, essv12279744, essv12279774, essv12279792, essv12279608, essv12279612, essv12279739, essv12279682, essv12279647, essv12279743, essv12279754, essv12279557, essv12279686, essv12279592, essv12279693, essv12279617, essv12279599, essv12279561, essv12279753, essv12279611, essv12279747, essv12279736, essv12279710, essv12279755, essv12279746, essv12279742, essv12279600, essv12279559, essv12279771, essv12279632, essv12279781, essv12279789, essv12279748, essv12279785, essv12279714, essv12279574, essv12279628, essv12279651, essv12279560, essv12279664, essv12279586, essv12279554, essv12279708, essv12279794, essv12279641, essv12279587, essv12279565, essv12279721, essv12279778, essv12279729, essv12279762, essv12279562, essv12279775, essv12279678, essv12279740, essv12279566, essv12279758, essv12279656, essv12279669, essv12279568, essv12279550, essv12279777, essv12279609, essv12279700, essv12279571, essv12279619, essv12279591, essv12279579, essv12279712, essv12279671, essv12279633, essv12279570, essv12279749, essv12279624, essv12279705, essv12279665, essv12279704, essv12279734, essv12279788, essv12279553, essv12279683, essv12279723, essv12279621, essv12279578, essv12279751, essv12279661, essv12279702, essv12279584, essv12279588, essv12279654, essv12279676, essv12279765, essv12279642
SamplesNA20339, HG01412, NA19058, HG01918, NA18861, HG03175, HG03111, HG00181, HG02691, NA20294, HG02050, NA19684, HG00449, HG00654, NA19443, HG03372, NA18633, NA18988, HG00271, HG02792, HG03837, HG03133, HG01873, HG01506, HG00356, NA19319, HG03452, HG01766, NA18993, HG02266, HG04182, NA18582, NA18571, NA12762, HG03224, HG00334, NA19130, NA19720, HG02561, HG02252, HG02634, HG00160, HG03073, NA18539, HG00743, NA18645, NA18605, NA20535, NA19908, NA19091, HG01435, HG03511, NA19006, HG03088, NA19086, NA19455, NA20314, HG01845, HG03775, NA18871, HG01029, NA18981, NA19064, HG00284, NA19084, HG02577, HG03446, HG02309, HG02635, HG01572, HG00240, HG01107, HG03743, NA18953, NA19003, HG01858, NA19729, NA19309, NA18533, NA20276, HG03708, HG02088, HG02220, HG03117, HG02611, NA20790, NA19835, HG00237, HG01113, HG03473, NA18943, HG02580, NA19360, NA18615, HG01785, HG02128, HG00513, NA18631, HG03097, HG03313, NA20289, NA20786, HG00112, HG02348, HG00728, HG00274, HG01431, NA18989, NA11892, NA19463, NA19065, HG03955, HG03439, NA21120, NA18577, HG03514, HG03366, NA19648, HG01098, HG02272, HG01961, NA18592, HG01855, NA18980, NA18561, HG03738, NA20531, NA18881, NA19734, HG03015, HG00306, NA18641, NA18917, NA18877, HG01305, NA19777, NA12058, HG02271, HG03139, HG01632, HG03944, HG01694, HG01140, HG01924, NA19068, NA19746, NA19076, HG00251, HG03099, HG04022, HG01997, HG02541, HG03370, NA20769, NA19131, NA19054, HG01393, HG02922, HG02111, HG03209, HG03986, HG01072, NA19731, HG01369, HG00422, HG00159, NA18864, HG03267, HG03583, NA18908, NA18640, HG00530, HG00419, NA18648, HG00464, HG03780, HG00560, HG02570, NA18613, NA20524, HG03644, HG02025, HG00190, HG01864, HG01271, HG00653, HG02108, NA18516, NA18915, HG00320, HG00533, HG02102, HG03311, HG03123, HG01615, HG01094, HG03202, HG03397, HG02283, HG00525, HG00321, NA19740, HG03755, NA18536, NA20534, NA20765, HG02455, NA21113, NA20773, NA18909, HG01190, NA19834, HG03461, HG01954, NA19732, HG01915, HG03689, NA20351, NA19334, HG01598, HG03127, HG00607, NA19467, NA12874, NA19818, NA19078, HG00672, HG03039, HG00371, HG00409, NA18987, HG00656, HG02053, NA19713, HG03410, HG01872, HG01781, NA19755, NA19146, NA21104, HG03698, HG02006, HG03686, HG00437, HG01976, HG01926
Known GenesHLA-DRB6
MethodSequencing
Analysis
PlatformMultiple platforms
Comments
Reference1000_Genomes_Consortium_Phase_3
Pubmed ID21293372
Accession Number(s)esv3608596
Frequency
Sample Size2504
Observed Gain0
Observed Loss246
Observed Complex0
Frequencyn/a


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